Raw expression matrix from Weinreb et al., 2020
Beiusxzw opened this issue · comments
Hi, I really appreciate the processed data from Weinreb et al., 2020 in thie repo. I would like to ask if I can access the Raw countt expression matrix for the In vitro and In vivo differentiation experiment? Thanks!
Unfortunately the raw counts are not available but you can recover them
easily from the normalized counts. During normalization each cell was
uniformly scaled by a common factor. You can recover this factor by taking
the reciprocal of the smallest non-zero gene-expression value for that
cell. You should then be able to rescale each cell such that all the gene
expression values are integers.
…On Thu, May 5, 2022 at 11:31 AM Snow ***@***.***> wrote:
Hi, I really appreciate the processed data from Weinreb et al., 2020 in
thie repo. I would like to ask if I can access the Raw countt expression
matrix for the In vitro and In vivo differentiation experiment? Thanks!
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Thanks for your reply!