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AdmiralenOla / niph_tb_pipeline

WGS pipeline for Mycobacterium tuberculosis at the Norwegian Institute of Public Health (NIPH)

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Do not call lineage if other mycobacterium

AdmiralenOla opened this issue · comments

commented

For example, when M. canetti, it should not say lineage 4.9 due to no mutations

commented

Remember - Check both species and speciesmash. The two might be different. For example, could be M orygis from mash and M africanum from Mykrobe

commented

Check if this works in 0.9e