AdmiralenOla / Scoary

Pan-genome wide association studies

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

How to output information concerning all genes ?

mylanhong opened this issue · comments

Hello, Ola,

After completing running, I found only genes associated with the trait were reports. How can I get the information of all genes when using GUI though most of them were not significant ?

Kind regards,

Lanhong

Hi @mylanhong.

Just remove the checks in all cut-off boxes. This means every gene will be reported, regardless of association.

Side note: I really recommend you to use the command line instead of the GUI. It will be a lot faster and less buggy.

Best regards,
Ola