Enable annotations to be assigned to segmentations
Abe404 opened this issue · comments
Segmentations are generated during the interactive training process i.e for each image the user annotates.
In some cases - for example semi-automatic image segmentation, it can be useful to work with these segmentations.
Right now the segmentations are available on disk and their corresponding annotations are also available on disk but it is not trivial for users to assign their corrections i.e the annotation file to the corresponding segmentation file in such a way that they get a corrected segmentation, which is what they would likely want in a semi-automatic image segmentation workflow.
There should be an option in the extras menu in the client software to allow the user to perform this function.
The form should include segmentation folder directory field, annotation folder field , output folder field and submit button. The user should be given feedback whilst the corrections (annotations) are being assigned and the corrected segmentations are being generated.
This is now implemented. Most recent relevant git commit is:
2d3155d
This is not really finished yet.
Turns out it is required that the corrected segmentations are generated at the same time the annotation is saved. They must also include the save headers as the image.
This is now implemented (again). f95f856