Radiomics does not work in latest stable release of Slicer
iboeth opened this issue · comments
Excuse my question, but I really do not know what to do.
As you mentioned on GitHub-Website, Radiomics should be installed on 3D-Slicer Version 4.13 (unstable).
I followed your description, but it is not possible installing any extension.
Additionally, DICOM-Data cannot be downloaded in 3D-Slicer, because "unfortunately, this request module is not available in this Slicer session".
Because of that I tried installing 3D-Slicer Verion 4.11, but I just can install "RadiomicsCLI", which works differently, as I noticed.
I have a Macbook (macOS Catalina, Version 10.15.7) and would be very pleasant for your help!
Sorry, the instructions are lagging behind the changing situation ... Can you try with the stable version?
I've just tested latest stable on mac, and it is broken. Let me look into this.
The stable version does not allow me extracting my "Segmentations", painted in the tumors.
Thanks for your feedback. I would be happy if you would find the mistake!
I don't know why this is happening, but some dependency packages are not available. Can you try opening python console
and then running the following commands in the console:
slicer.util.pip_install('pywavelets')
slicer.util.pip_install('python-dateutil')and then try to use the module again after restarting Slicer (stable version)?
When I opened python console, this appears and I cannot follow your instructions...
yes - can paste these two lines, one at a time, into that window, and hit "Enter"?
slicer.util.pip_install('pywavelets')
slicer.util.pip_install('python-dateutil')
Okay, so I did.
Can you now restart Slicer, and see if the module works for you, or let me know what does not work?
I restarted and this happened... I´m so sorry for the circumstances...
what messages do you see after you enter slicer.util.pip_install('pywavelets') and hit "Enter" in the python console?
@iboeth something went wrong in your upload in the previous post.
Next try.
I recently starteted 3D-Slicer again and this appeared. Perhaps it helps...
Can I use an old version to avoid this bug?
In my opinion, the "oldest" version is 4.11.
I restarted this version of 3D-Slicer the last days, but it did not work...
Try to use python?
Oh! There is no bug today! Thanks!!
But there is still a problem with "extensions", as you see below...
can it work now?
No, it ist still the same.
I searched for "Radiomics" and the following happened:
Now, can it work?And Is there a solution for the problem?
This is the current status. The extention "Radiomics" is also still mapped differently than on the Windows system, but I do not know if that matters...
@LiDelight can you open the python interactor, and run the following two commands there? The issue is in the missing dependency packages, and when I did what I am suggesting here on mac, this resolved the problem for me.
slicer.util.pip_install('pywavelets')
slicer.util.pip_install('python-dateutil')
@fedorov: The Link is usefull for me, too! It seems that my problems are solved!! Thank you so much!!
OMG, it work, now. I install the stable version of 3D slicer. 淦!
It is me again...
Using the ruler shows no measure of my ROI. What am I doing wrong?
Please use Slicer forum for questions about Slicer https://discourse.slicer.org.
Thank you!!
Yesterday I added a fix to check for missing modules and install if they are not present. Please check the latest stable build and let us know if the issue is not resolved.