the problems in installation
XiaoleLei opened this issue · comments
Hi,
when I installed the yhaplo using command "pip install --editable ."
I got an error like followed. Could you give some advise to solve it? Thank you so much.
Best,
Xiaole
error
Obtaining file:///data1/apps/Yhaplo/yhaplo-2.0.2
Installing build dependencies ... done
Checking if build backend supports build_editable ... done
Getting requirements to build editable ... error
error: subprocess-exited-with-error
× Getting requirements to build editable did not run successfully.
│ exit code: 1
╰─> [43 lines of output]
Traceback (most recent call last):
File "/root/miniconda3/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in
main()
File "/root/miniconda3/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/root/miniconda3/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 132, in get_requires_for_build_editable
return hook(config_settings)
^^^^^^^^^^^^^^^^^^^^^
File "/tmp/pip-build-env-jw98plu8/overlay/lib/python3.11/site-packages/setuptools/build_meta.py", line 468, in get_requires_for_build_editable
return self.get_requires_for_build_wheel(config_settings)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/tmp/pip-build-env-jw98plu8/overlay/lib/python3.11/site-packages/setuptools/build_meta.py", line 355, in get_requires_for_build_wheel
return self._get_build_requires(config_settings, requirements=['wheel'])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/tmp/pip-build-env-jw98plu8/overlay/lib/python3.11/site-packages/setuptools/build_meta.py", line 325, in _get_build_requires
self.run_setup()
File "/tmp/pip-build-env-jw98plu8/overlay/lib/python3.11/site-packages/setuptools/build_meta.py", line 341, in run_setup
exec(code, locals())
File "", line 5, in
File "/tmp/pip-build-env-jw98plu8/overlay/lib/python3.11/site-packages/setuptools/init.py", line 103, in setup
return distutils.core.setup(**attrs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/tmp/pip-build-env-jw98plu8/overlay/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 147, in setup
_setup_distribution = dist = klass(attrs)
^^^^^^^^^^^^
File "/tmp/pip-build-env-jw98plu8/overlay/lib/python3.11/site-packages/setuptools/dist.py", line 303, in init
_Distribution.init(self, dist_attrs)
File "/tmp/pip-build-env-jw98plu8/overlay/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 283, in init
self.finalize_options()
File "/tmp/pip-build-env-jw98plu8/overlay/lib/python3.11/site-packages/setuptools/dist.py", line 680, in finalize_options
ep(self)
File "/tmp/pip-build-env-jw98plu8/overlay/lib/python3.11/site-packages/setuptools_scm/_integration/setuptools.py", line 125, in infer_version
_assign_version(dist, config)
File "/tmp/pip-build-env-jw98plu8/overlay/lib/python3.11/site-packages/setuptools_scm/_integration/setuptools.py", line 57, in _assign_version
_version_missing(config)
File "/tmp/pip-build-env-jw98plu8/overlay/lib/python3.11/site-packages/setuptools_scm/_get_version_impl.py", line 108, in _version_missing
raise LookupError(
LookupError: setuptools-scm was unable to detect version for /data1/apps/Yhaplo/yhaplo-2.0.2.
Make sure you're either building from a fully intact git repository or PyPI tarballs. Most other sources (such as GitHub's tarballs, a git checkout without the .git folder) don't contain the necessary metadata and will not work.
For example, if you're using pip, instead of https://github.com/user/proj/archive/master.zip use git+https://github.com/user/proj.git#egg=proj
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error
× Getting requirements to build editable did not run successfully.
│ exit code: 1
╰─> See above for output.
note: This error originates from a subprocess, and is likely not a problem with pip.
error
Hi, thanks for writing in. As the error message suggests, yhaplo is currently only installable "from a fully intact git repository" (i.e., not from the release .zip or .tar.gz). Here are instructions for cloning the repo and installing:
https://github.com/23andMe/yhaplo#basic-installation
Does that work for you?
Hi David,
Thank you for your prompt response.
Your advice was very effective. I have successfully installed yhaplo. However, sometimes "git clone git@github.com:23andMe/yhaplo.git" doesn't work. I had good results using "git clone https://github.com/23andMe/yhaplo.git".
Anyway, thank you for your help again.
Best,
Xiaole
OK, great. I'm glad you're all set. Cloning with HTTPS is fine for this purpose.
If you're having trouble cloning with SSH, these GitHub docs may help:
https://docs.github.com/en/authentication/connecting-to-github-with-ssh